netpyne.specs.netParams

Module containing classes for high-level network parameters and methods

Classes:

PopParams(*args, **kwargs)	Class to hold population parameters
CellParams(*args, **kwargs)	Class to hold cell parameters
ConnParams(*args, **kwargs)	Class to hold connectivity parameters
SynMechParams(*args, **kwargs)	Class to hold synaptic mechanism parameters
SubConnParams(*args, **kwargs)	Class to hold subcellular connectivity parameters
StimSourceParams(*args, **kwargs)	Class to hold stimulation source parameters
StimTargetParams(*args, **kwargs)	Class to hold stimulation target parameters
RxDParams(*args, **kwargs)	Class to hold reaction-diffusion (RxD) parameters
NetParams([netParamsDict])	Class to hold all network parameters

class netpyne.specs.netParams.PopParams(*args, **kwargs)

Bases: ODict

Class to hold population parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])

setParam(label, param, value)

rename(old, new, label=None)

class netpyne.specs.netParams.CellParams(*args, **kwargs)

Bases: ODict

Class to hold cell parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])
pointpParamsReservedKeys()
preprocessStringFunctions()
updateStringFuncsWithPopParams(popLabel, params)
stringFuncAndVarsForCellVar(cellType, ...)
stringFuncAndVarsForGeom(cellType, section, ...)
stringFuncAndVarsForMod(cellType, section, ...)
stringFuncAndVarsForPointCell(cellTypeOrPop, ...)

setParam(label, param, value)

rename(old, new, label=None)

static pointpParamsReservedKeys()

preprocessStringFunctions()

static updateStringFuncsWithPopParams(popLabel, params)

static stringFuncAndVarsForCellVar(cellType, cellVarName)

static stringFuncAndVarsForGeom(cellType, section, param)

static stringFuncAndVarsForMod(cellType, section, modType, mod, param)

static stringFuncAndVarsForPointCell(cellTypeOrPop, param)

class netpyne.specs.netParams.ConnParams(*args, **kwargs)

Bases: ODict

Class to hold connectivity parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])

setParam(label, param, value)

rename(old, new, label=None)

class netpyne.specs.netParams.SynMechParams(*args, **kwargs)

Bases: ODict

Class to hold synaptic mechanism parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])
preprocessStringFunctions()
stringFunctionAndVars(synMechName, paramName)
isPointerConn(synMechLabel)
hasPointerConns()
reservedKeys()
stringFuncVarNames()
stringFuncVarsEvaluators()
stringFuncVarsReferringPreLoc()
stringFuncsReferPreLoc(synMech)

setParam(label, param, value)

rename(old, new, label=None)

preprocessStringFunctions()

static stringFunctionAndVars(synMechName, paramName)

isPointerConn(synMechLabel)

hasPointerConns()

static reservedKeys()

static stringFuncVarNames()

static stringFuncVarsEvaluators()

static stringFuncVarsReferringPreLoc()

static stringFuncsReferPreLoc(synMech)

class netpyne.specs.netParams.SubConnParams(*args, **kwargs)

Bases: ODict

Class to hold subcellular connectivity parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])

setParam(label, param, value)

rename(old, new, label=None)

class netpyne.specs.netParams.StimSourceParams(*args, **kwargs)

Bases: ODict

Class to hold stimulation source parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])

setParam(label, param, value)

rename(old, new, label=None)

class netpyne.specs.netParams.StimTargetParams(*args, **kwargs)

Bases: ODict

Class to hold stimulation target parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])

setParam(label, param, value)

rename(old, new, label=None)

class netpyne.specs.netParams.RxDParams(*args, **kwargs)

Bases: ODict

Class to hold reaction-diffusion (RxD) parameters

Methods:

setParam(label, param, value)
rename(old, new[, label])

setParam(label, param, value)

rename(old, new, label=None)

class netpyne.specs.netParams.NetParams(netParamsDict=None)

Bases: object

Class to hold all network parameters

Methods:

save(filename)
addCellParams([label, params])
addPopParams([label, params])
addSynMechParams([label, params])
addConnParams([label, params])
addSubConnParams([label, params])
addStimSourceParams([label, params])
addStimTargetParams([label, params])
importCellParams(label, fileName, cellName)
importCellParamsFromNet(labelList, ...[, ...])
addCellParamsSecList(label, secListName[, ...])
swapCellParamsPt3d(label, origIndex, targetIndex)
renameCellParamsSec(label, oldSec, newSec)
addCellParamsWeightNorm(label, fileName[, ...])
addCellParamsTemplate(label[, conds, template])
saveCellParamsRule(label, fileName)
loadCellParamsRule(label, fileName)
loadCellParams(label, fileName)
saveCellParams(label, fileName)
todict()
setNestedParam(paramLabel, paramVal)
setCfgMapping(cfg)

save(filename)

addCellParams(label=None, params=None)

addPopParams(label=None, params=None)

addSynMechParams(label=None, params=None)

addConnParams(label=None, params=None)

addSubConnParams(label=None, params=None)

addStimSourceParams(label=None, params=None)

addStimTargetParams(label=None, params=None)

importCellParams(label, fileName, cellName, conds={}, cellArgs=None, importSynMechs=False, somaAtOrigin=True, cellInstance=False)

importCellParamsFromNet(labelList, condsList, fileName, cellNameList, importSynMechs=False)

addCellParamsSecList(label, secListName, somaDist=None, somaDistY=None)

swapCellParamsPt3d(label, origIndex, targetIndex)

renameCellParamsSec(label, oldSec, newSec)

addCellParamsWeightNorm(label, fileName, threshold=1000)

addCellParamsTemplate(label, conds={}, template=None)

saveCellParamsRule(label, fileName)

loadCellParamsRule(label, fileName)

loadCellParams(label, fileName)

saveCellParams(label, fileName)

todict()

setNestedParam(paramLabel, paramVal)

setCfgMapping(cfg)