netpyne.cell.compartCell module

Module containing a compartmental cell class

class netpyne.cell.compartCell.CompartCell(gid, tags, create=True, associateGid=True)[source]

Bases: Cell

Class for/to <short description of netpyne.cell.compartCell.CompartCell>

create(createNEURONObj=None)[source]

modify(prop)[source]

createPyStruct(prop)[source]

initV()[source]

createNEURONObj(prop, propLabel=None)[source]

addSynMechNEURONObj(synMech, synMechLabel, synMechParams, sec, loc, preLoc=None)[source]

static stringFuncVarNames()[source]

static stringFuncVarNamesForCellVars()[source]

addSynMechsNEURONObj()[source]

addStimsNEURONObj()[source]

addConnsNEURONObj()[source]

static spikeGenLocAndSec(secs)[source]

associateGid(threshold=None)[source]

addSynMech(synLabel, secLabel, loc, preLoc=None)[source]

modifySynMechs(params)[source]

addConn(params, netStimParams=None)[source]

modifyConns(params)[source]

modifyStims(params)[source]

addStim(params)[source]

getSomaPos()[source]: Get soma position; Used to calculate seg coords for LFP calc (one per population cell; assumes same morphology)

calcAbsSegCoords()[source]: Calculate absolute seg coords by translating the relative seg coords – used for LFP calc

setImembPtr()[source]: Set PtrVector to point to the i_membrane_

getImemb()[source]: Gather membrane currents from PtrVector into imVec (does not need a loop!)

updateShape()[source]: Call after h.define_shape() to update cell coords

originSecName()[source]

originSec()[source]