netpyne.cell.compartCell

Module containing a compartmental cell class

Classes:

CompartCell(gid, tags[, create, associateGid])

Class for/to <short description of netpyne.cell.compartCell.CompartCell>

class netpyne.cell.compartCell.CompartCell(gid, tags, create=True, associateGid=True)

Bases: Cell

Class for/to <short description of netpyne.cell.compartCell.CompartCell>

Methods:

create([createNEURONObj])
modify(prop)
createPyStruct(prop)
initV()
createNEURONObj(prop[, propLabel])
addSynMechNEURONObj(synMech, synMechLabel, ...)
stringFuncVarNames()
stringFuncVarNamesForCellVars()
addSynMechsNEURONObj()
addStimsNEURONObj()
addConnsNEURONObj()
spikeGenLocAndSec(secs)
associateGid([threshold])
addSynMech(synLabel, secLabel, loc[, preLoc])
modifySynMechs(params)
addConn(params[, netStimParams])
modifyConns(params)
modifyStims(params)
addStim(params)
getSomaPos()	Get soma position; Used to calculate seg coords for LFP calc (one per population cell; assumes same morphology)
calcAbsSegCoords()	Calculate absolute seg coords by translating the relative seg coords -- used for LFP calc
setImembPtr()	Set PtrVector to point to the i_membrane_
getImemb()	Gather membrane currents from PtrVector into imVec (does not need a loop!)
updateShape()	Call after h.define_shape() to update cell coords
originSecName()
originSec()

create(createNEURONObj=None)

modify(prop)

createPyStruct(prop)

initV()

createNEURONObj(prop, propLabel=None)

addSynMechNEURONObj(synMech, synMechLabel, synMechParams, sec, loc, preLoc=None)

static stringFuncVarNames()

static stringFuncVarNamesForCellVars()

addSynMechsNEURONObj()

addStimsNEURONObj()

addConnsNEURONObj()

static spikeGenLocAndSec(secs)

associateGid(threshold=None)

addSynMech(synLabel, secLabel, loc, preLoc=None)

modifySynMechs(params)

addConn(params, netStimParams=None)

modifyConns(params)

modifyStims(params)

addStim(params)

getSomaPos()

Get soma position; Used to calculate seg coords for LFP calc (one per population cell; assumes same morphology)

calcAbsSegCoords()

Calculate absolute seg coords by translating the relative seg coords – used for LFP calc

setImembPtr()

Set PtrVector to point to the i_membrane_

getImemb()

Gather membrane currents from PtrVector into imVec (does not need a loop!)

updateShape()

Call after h.define_shape() to update cell coords

originSecName()

originSec()