netpyne.sim.load

Module for loading of data and simulations

Functions:

loadSimCfg(filename[, data, variable, setLoaded])

Function for/to <short description of netpyne.sim.load.loadSimCfg>

loadNetParams(filename[, data, variable, ...])

Function for/to <short description of netpyne.sim.load.loadNetParams>

loadNet(filename[, data, instantiate, ...])

Function for/to <short description of netpyne.sim.load.loadNet>

loadSimData(filename[, data])

Function to load simulation data from a file

loadAll(filename[, data, instantiate, ...])

Function for/to <short description of netpyne.sim.load.loadAll>

loadFromIndexFile(index)

loadModel(path[, loadMechs, ...])

processModFiles(modFolderPath[, forceCompile])

compactToLongConnFormat(cells, connFormat)

Function for/to <short description of netpyne.sim.load.compactToLongConnFormat>

loadHDF5(filename)

Function for/to <short description of netpyne.sim.load.loadHDF5>

ijsonLoad(filename[, tagsGidRange, ...])

Function for/to <short description of netpyne.sim.load.ijsonLoad>
netpyne.sim.load.loadSimCfg(filename, data=None, variable='simConfig', setLoaded=True)[source]

Function for/to <short description of netpyne.sim.load.loadSimCfg>

Parameters:

  • filename (<type>) – <Short description of filename> Default: required

  • data (<None?>) – <Short description of data> Default: None Options: <option> <description of option>

  • setLoaded (bool) – <Short description of setLoaded> Default: True Options: <option> <description of option>

netpyne.sim.load.loadNetParams(filename, data=None, variable=None, setLoaded=True)[source]

Function for/to <short description of netpyne.sim.load.loadNetParams>

Parameters:

  • filename (<type>) – <Short description of filename> Default: required

  • data (<None?>) – <Short description of data> Default: None Options: <option> <description of option>

  • setLoaded (bool) – <Short description of setLoaded> Default: True Options: <option> <description of option>

netpyne.sim.load.loadNet(filename, data=None, instantiate=True, compactConnFormat=False)[source]

Function for/to <short description of netpyne.sim.load.loadNet>

Parameters:

  • filename (<type>) – <Short description of filename> Default: required

  • data (<None?>) – <Short description of data> Default: None Options: <option> <description of option>

  • instantiate (bool) – <Short description of instantiate> Default: True Options: <option> <description of option>

  • compactConnFormat (bool) – <Short description of compactConnFormat> Default: False Options: <option> <description of option>

netpyne.sim.load.loadSimData(filename, data=None)[source]

Function to load simulation data from a file

Parameters:

  • filename (str) – The path and name of the file where the data is stored. Default: required

  • data (dict) – A dictionary containing a simData key. Default: None

netpyne.sim.load.loadAll(filename, data=None, instantiate=True, createNEURONObj=True)[source]

Function for/to <short description of netpyne.sim.load.loadAll>

Parameters:

  • filename (<type>) – <Short description of filename> Default: required

  • data (<None?>) – <Short description of data> Default: None Options: <option> <description of option>

  • instantiate (bool) – <Short description of instantiate> Default: True Options: <option> <description of option>

  • createNEURONObj (bool) – <Short description of createNEURONObj> Default: True Options: <option> <description of option>

netpyne.sim.load.loadFromIndexFile(index)[source]
netpyne.sim.load.loadModel(path, loadMechs=True, forceCompileMechs=False, returnLoadMechStatus=False)[source]
netpyne.sim.load.processModFiles(modFolderPath, forceCompile=False)[source]
netpyne.sim.load.compactToLongConnFormat(cells, connFormat)[source]

Function for/to <short description of netpyne.sim.load.compactToLongConnFormat>

Parameters:

  • cells (<type>) – <Short description of cells> Default: required

  • connFormat (<type>) – <Short description of connFormat> Default: required

netpyne.sim.load.loadHDF5(filename)[source]

Function for/to <short description of netpyne.sim.load.loadHDF5>

Parameters:

filename (<type>) – <Short description of filename> Default: required

netpyne.sim.load.ijsonLoad(filename, tagsGidRange=None, connsGidRange=None, loadTags=True, loadConns=True, tagFormat=None, connFormat=None, saveTags=None, saveConns=None)[source]

Function for/to <short description of netpyne.sim.load.ijsonLoad>

Parameters:

  • filename (<type>) – <Short description of filename> Default: required

  • tagsGidRange (<None?>) – <Short description of tagsGidRange> Default: None Options: <option> <description of option>

  • connsGidRange (<None?>) – <Short description of connsGidRange> Default: None Options: <option> <description of option>

  • loadTags (bool) – <Short description of loadTags> Default: True Options: <option> <description of option>

  • loadConns (bool) – <Short description of loadConns> Default: True Options: <option> <description of option>

  • tagFormat (<None?>) – <Short description of tagFormat> Default: None Options: <option> <description of option>

  • connFormat (<None?>) – <Short description of connFormat> Default: None Options: <option> <description of option>

  • saveTags (<None?>) – <Short description of saveTags> Default: None Options: <option> <description of option>

  • saveConns (<None?>) – <Short description of saveConns> Default: None Options: <option> <description of option>