netpyne.sim.utils module

Module for utilities related to simulation

netpyne.sim.utils.loadPythonModule(path)

netpyne.sim.utils.cellByGid(gid)

Function for/to <short description of netpyne.sim.utils.cellByGid>

Parameters:

gid (<type>) – <Short description of gid> Default: required

netpyne.sim.utils.getCellsList(include, returnGids=False)

Function for/to <short description of netpyne.sim.utils.getCellsList>

Parameters:

• include (<type>) – <Short description of include> Default: required

• returnGids (bool) – <Short description of returnGids> Default: False Options: <option> <description of option>

netpyne.sim.utils.timing(mode, processName)

Function for/to <short description of netpyne.sim.utils.timing>

Parameters:

• mode (<type>) – <Short description of mode> Default: required

• processName (<type>) – <Short description of processName> Default: required

netpyne.sim.utils.version(show=True)

Function for/to <short description of netpyne.sim.utils.version>

Parameters:

show (bool) – <Short description of show> Default: True Options: <option> <description of option>

netpyne.sim.utils.gitChangeset(show=True)

Function for/to <short description of netpyne.sim.utils.gitChangeset>

Parameters:

show (bool) – <Short description of show> Default: True Options: <option> <description of option>

netpyne.sim.utils.gitInfo(show=True)

Function for/to <short description of netpyne.sim.utils.gitInfo>

Parameters:

show (bool) – <Short description of show> Default: True Options: <option> <description of option>

netpyne.sim.utils.hashStr(obj)

Function for/to <short description of netpyne.sim.utils.hashStr>

Parameters:

obj (<type>) – <Short description of obj> Default: required

netpyne.sim.utils.hashList(obj)

Function for/to <short description of netpyne.sim.utils.hashList>

Parameters:

obj (<type>) – <Short description of obj> Default: required

netpyne.sim.utils.fileDigest(file)

netpyne.sim.utils.unique(seq)

Function for/to <short description of netpyne.sim.utils.unique>

Parameters:

seq (<type>) – <Short description of seq> Default: required

netpyne.sim.utils.checkMemory()

Function for/to <short description of netpyne.sim.utils.checkMemory>

netpyne.sim.utils.copyReplaceItemObj(obj, keystart, newval, objCopy='ROOT', exclude_list=[])

Function for/to <short description of netpyne.sim.utils.copyReplaceItemObj>

Parameters:

• obj (<type>) – <Short description of obj> Default: required

• keystart (<type>) – <Short description of keystart> Default: required

• newval (<type>) – <Short description of newval> Default: required

• objCopy (str) – <Short description of objCopy> Default: 'ROOT' Options: <option> <description of option>

• exclude_list (list) – <Short description of exclude_list> Default: [] Options: <option> <description of option>

netpyne.sim.utils.copyRemoveItemObj(obj, keystart, objCopy='ROOT', exclude_list=[])

Function for/to <short description of netpyne.sim.utils.copyRemoveItemObj>

Parameters:

• obj (<type>) – <Short description of obj> Default: required

• keystart (<type>) – <Short description of keystart> Default: required

• objCopy (str) – <Short description of objCopy> Default: 'ROOT' Options: <option> <description of option>

• exclude_list (list) – <Short description of exclude_list> Default: [] Options: <option> <description of option>

netpyne.sim.utils.replaceItemObj(obj, keystart, newval, exclude_list=[])

Function for/to <short description of netpyne.sim.utils.replaceItemObj>

Parameters:

• obj (<type>) – <Short description of obj> Default: required

• keystart (<type>) – <Short description of keystart> Default: required

• newval (<type>) – <Short description of newval> Default: required

• exclude_list (list) – <Short description of exclude_list> Default: [] Options: <option> <description of option>

netpyne.sim.utils.replaceKeys(obj, oldkey, newkey)

Function for/to <short description of netpyne.sim.utils.replaceKeys>

Parameters:

• obj (<type>) – <Short description of obj> Default: required

• oldkey (<type>) – <Short description of oldkey> Default: required

• newkey (<type>) – <Short description of newkey> Default: required

netpyne.sim.utils.replaceFuncObj(obj)

Function for/to <short description of netpyne.sim.utils.replaceFuncObj>

Parameters:

obj (<type>) – <Short description of obj> Default: required

netpyne.sim.utils.replaceDictODict(obj)

Function for/to <short description of netpyne.sim.utils.replaceDictODict>

Parameters:

obj (<type>) – <Short description of obj> Default: required

netpyne.sim.utils.rename(obj, old, new, label=None)

Function for/to <short description of netpyne.sim.utils.rename>

Parameters:

• obj (<type>) – <Short description of obj> Default: required

• old (<type>) – <Short description of old> Default: required

• new (<type>) – <Short description of new> Default: required

• label (<None?>) – <Short description of label> Default: None Options: <option> <description of option>

netpyne.sim.utils.tupleToList(obj)

Function for/to <short description of netpyne.sim.utils.tupleToList>

Parameters:

obj (<type>) – <Short description of obj> Default: required

netpyne.sim.utils.decimalToFloat(obj)

Function for/to <short description of netpyne.sim.utils.decimalToFloat>

Parameters:

obj (<type>) – <Short description of obj> Default: required

netpyne.sim.utils.clearObj(obj)

Function for/to <short description of netpyne.sim.utils.clearObj>

Parameters:

obj (<type>) – <Short description of obj> Default: required

netpyne.sim.utils.clearAll()

Function to clear all sim objects in memory

netpyne.sim.utils.checkConditions(conditions, against, cellGid=None)

class netpyne.sim.utils.NpSerializer(*, skipkeys=False, ensure_ascii=True, check_circular=True, allow_nan=True, sort_keys=False, indent=None, separators=None, default=None)

Bases: JSONEncoder

Class for/to <short description of netpyne.sim.utils.NpSerializer>

default(obj)

Implement this method in a subclass such that it returns a serializable object for o, or calls the base implementation (to raise a TypeError).

For example, to support arbitrary iterators, you could implement default like this:

def default(self, o):
    try:
        iterable = iter(o)
    except TypeError:
        pass
    else:
        return list(iterable)
    # Let the base class default method raise the TypeError
    return super().default(o)