netpyne.sim.save module

Module related to saving

netpyne.sim.save.saveJSON(fileName, data, checkFileTimeout=0)[source]

Function for/to <short description of netpyne.sim.save.saveJSON>

Parameters:

  • fileName (<type>) – <Short description of fileName> Default: required

  • data (<type>) – <Short description of data> Default: required

  • checkFileTimeout (timeout (sec)) – if >0 then will check if file exists before continuing at 0.1 ms intervals for the timeout specified in secs

netpyne.sim.save.saveData(include=None, filename=None, saveLFP=True)[source]

Function to save simulation data to file

Parameters:

  • include (list) – What data to save Default: sim.cfg.saveDataInclude Options: The list may include any combination of the following: 'simData', 'simConfig', 'netParams', 'net'.

  • filename (str) – Path and file name to save data to Default: None

netpyne.sim.save.distributedSaveHDF5()[source]

Function for/to <short description of netpyne.sim.save.distributedSaveHDF5>

netpyne.sim.save.compactConnFormat()[source]

Function for/to <short description of netpyne.sim.save.compactConnFormat>

netpyne.sim.save.intervalSave(simTime, gatherLFP=True)[source]

Function to save data at a specific time point in the simulation

Parameters:

simTime (number) – The time at which to save the data Default: required

netpyne.sim.save.saveDataInNodes(filename=None, saveLFP=True, removeTraces=False, saveFolder=None)[source]

Function to save simulation data by node rather than as a whole

Parameters:

  • filename (str) – The name to use for the saved files. Default: None

  • saveLFP (bool) – Whether to save any LFP data. Default: True saves LFP data. Options: False does not save LFP data.

  • removeTraces (bool) – Whether to remove traces data before saving. Default: False does not remove the trace data. Options: True removes the trace data.

  • saveFolder (str) – Name of the directory where data files will be saved. Default: None saves to the default directory.

netpyne.sim.save.saveModel(netParams, simConfig, srcPath, dstPath=None, exportNetParamsAsPython=False, exportSimConfigAsPython=False)[source]